rs239982528 SNP Detail

Summary

• ID
  rs239982528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124748692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGCACC CCGATCTCCT
  ACACGGAGCT CGGACTCGAG GGAGCCCCGA TCCAGGTAGT AGGATTTGAA GGTATCATGA
  TAAACTAGAA CCACCACCTC CTCCTCCTCC TCCTCCTCCA CCACCACCAC CACCACCACC
  ACCACCACCA CCACCACCAC CAAAACCAAA CTTTTTATTT GTATGGGTGT TTTATGTACA
  Y
  CCGCAGAGGA TAAAAGAGGG GCGTTCCTCT AGAACTGGAG TGGTGGTTGT GAGCCAAGAT
  GTGGGATATT GGGACTCGAA CCTGGGTTCT CTGGAACAGC AGTAAGTAAT CCTAACCACG
  GAGTCATCTT TCCAGCCCCC TAGAACATTG ATTCTCAACC TTCCTAATCC TGCAACCCTT
  TGTTCATGTT GTGGTGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376355954	MGP_WTSI_8_126545853	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	T	C	C	C	T	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239982528					SNP	C	C	T	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	T	C	C	C	T	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376355954	MGP_WTSI_8_126545853	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124748692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	107 bp distal
Mir1967	microRNA 1967	688 bp upstream
Rr672602	regulatory region 672602	956 bp distal
Rr672603	regulatory region 672603	1111 bp distal
Rr672604	regulatory region 672604	954 bp distal
Rr672605	regulatory region 672605	66 bp distal
Taf5l	TATA-box binding protein associated factor 5 like	556 bp upstream
Tssr80012	transcription start site region 80012	752 bp downstream
Tssr80013	transcription start site region 80013	438 bp downstream
Tssr80014	transcription start site region 80014	423 bp downstream
Tssr80015	transcription start site region 80015	374 bp downstream
Tssr83422	transcription start site region 83422	998 bp upstream
Tssr83423	transcription start site region 83423	847 bp upstream
Tssr83424	transcription start site region 83424	508 bp upstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	within coordinates