rs239985831 SNP Detail

Summary

• ID
  rs239985831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152555228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGGGCTCG CTGTAACGTT CAATGGCAAT
  CTTTTCTTCT GGTTACGGAT GAGTATAGGT CATCACAAAC CTTATGAAAA TCAGTTCTGA
  AAAGCTGACA TCCTAACCTA CCCAACACCC CAAACATCAC TTGATCAAAC TCCTGGATGG
  Y
  CAGACCAGTC CTAAGTTGGA ACCAGGCTGG GGAAAGAAGT GGAATGTCCA AAAAGGGAAA
  TATGTAATCA GAGAACACAG ACGCAACTTT TCTTCCCTCa aatattaaaa attaaaattt
  CTTGAGAAAA ATTCCCTGCT GTCTCCACTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320067384	CHEV_1_154526607	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239985831					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152555228 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	748 bp distal
Rr420517	regulatory region 420517	817 bp distal