rs239993389 SNP Detail

Summary

• ID
  rs239993389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102285087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGCGTA GGGATCCCCA
  AATAAGAACC TATTTTCTCT TTTAAGAATC TCTTAGTACT CCTTAAGCTT AGACCTCCAA
  TATATTCACA GTTGCCTGAA GTCCTGTGTG AACAATGGTC AGGCTCACAG AACCACACTT
  TCTGGGCAAC TTAGGAAAGG TGGCACGAGC GCTGGGAGCC AAGAGTGAGG CTCGAGGTTG
  R
  AAGGCTTTCC ATTTTCTGAC TTGTTCCTTG GGCTAGTTTT TATCTCCCAT GCATTTCAAT
  TTCTCAACTT GAGAAATGAG GATAATAAAT CGCGCCAAAC TTACAGGTTG TTATGCAGCT
  CAGGTGAAAT ATTAACGGTA ACCATAACAA CAGCATTAGC AGACTCTTAC TAAGTCCTTA
  CTTCTTCTGG GCGTGGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437771	CHEV_2_102294899	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239993389					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102285087 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	904 bp distal
Rr561698	regulatory region 561698	1151 bp distal