rs239998662 SNP Detail

Summary

• ID
  rs239998662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104422385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAT TCCCAACCCC GCACTCCACA
  R
  TACAGACAGA TAAATGATGC GGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514934	CHEV_13_105075957	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239998662					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104422385 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	1958 bp upstream
Gm60746	predicted gene, 60746	637 bp downstream
Gm60750	predicted gene, 60750	1223 bp upstream
Rr369763	regulatory region 369763	934 bp upstream
Rr403946	regulatory region 403946	141 bp upstream
Rr485428	regulatory region 485428	268 bp distal
Rr485429	regulatory region 485429	773 bp distal
Rr485430	regulatory region 485430	733 bp proximal
Rr485431	regulatory region 485431	1328 bp proximal
Tssr120915	transcription start site region 120915	1156 bp upstream
Tssr120916	transcription start site region 120916	1212 bp upstream
Tssr120917	transcription start site region 120917	1241 bp upstream
Tssr120918	transcription start site region 120918	1259 bp upstream
Tssr120919	transcription start site region 120919	1480 bp upstream
Tssr120920	transcription start site region 120920	1575 bp upstream
Tssr120921	transcription start site region 120921	1614 bp upstream
Tssr120922	transcription start site region 120922	1631 bp upstream
Tssr120923	transcription start site region 120923	1978 bp upstream