rs240000334 SNP Detail

Summary

• ID
  rs240000334
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:32902641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACAACC ATGTCCTTCT
  CCATCCACCA CTGCTTGGGA CGAGGCAAGG ATACTTGGTC CTCAGTGGAA TGGAACATTC
  CAACTTAAGT CAACAAACGG AGCAGCCCAG TTAGCAGTTA TTATAAGTGT GTATGGGTGT
  GAGGGGTGAG GTACTGAGTG GGCATGTGTG TGGGGGGGTG GGTGGTACAG GTGTACTCTC
  S
  GGTTTGTGCA CACCTCCTAT TTCTGACTTG GTAGGTTCTG GTCTGGGCAG ATGAAAGGCA
  GGCAGACTCC AACAAGCCCT TCCTGGGCAA GAGACCCGCA AAGCCCAGAT CATGCATCTC
  CTGCTCCCTT TAACTCATGG CCCCACCCTA CAGGTCTTCG GCCATTTCTA CCTTAGCTTC
  CTGAGGCAGG GCCTCCTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364466289	MGP_WTSI_5_33087945	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240000334					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364466289	MGP_WTSI_5_33087945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32902641 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	1187 bp upstream
Pisd	phosphatidylserine decarboxylase	Intron
Rr609420	regulatory region 609420	468 bp proximal
Rr609421	regulatory region 609421	1005 bp proximal
Rr609422	regulatory region 609422	1198 bp proximal
Tssr45794	transcription start site region 45794	822 bp upstream
Tssr45795	transcription start site region 45795	1224 bp upstream
Tssr50589	transcription start site region 50589	975 bp downstream
Tssr50590	transcription start site region 50590	1020 bp downstream
Tssr50591	transcription start site region 50591	1046 bp downstream