rs240006671 SNP Detail

Summary

• ID
  rs240006671
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57011517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGACCTC ATGCACCGGG
  CGACGAAGGA CGGATGGCTG AGGACTGAGT GTGGCGCGAG GCGGTGGCCA CGGCCGACGA
  ATGGGTGCGT CTAAGCGCTG ACGAACGCCA GGGCCCAGGG TCTGGTCCTC CTCCTTGTAG
  CAAGTCCAGG GCGCAGCCGC CTCGCCCAGC CCCTAGGCGC ACTCGTCCCG GCGCGCAGGC
  W
  GCGGCGACTA GGCGGGCGCT CCGTGTCGCG GCTCGCCGCA GAGGCGCAGG CTGGCGCTCG
  GGAGGCGGCA GAGGCTGCCT CGTCTCCGGG CTCTGTTAAT TGCGCCGCCG AGTACTTTCG
  ACTTTGGAGA TAGGAGGGCG ATCGCCTCCC CCACCCACCG CCTCCGCCCA CCACCCACCG
  CCTCCGCCCC TCGGAGCAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349733848	MGP_WTSI_1_57029202	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240006671					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349733848	MGP_WTSI_1_57029202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57011517 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	within coordinates
Cpgi268	CpG island 268	1141 bp distal
Cpgi269	CpG island 269	within coordinates
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	853 bp downstream
Tssr6737	transcription start site region 6737	314 bp downstream
Tssr6738	transcription start site region 6738	152 bp downstream
Tssr6739	transcription start site region 6739	197 bp upstream
Tssr6740	transcription start site region 6740	1674 bp upstream
Tssr11747	transcription start site region 11747	1080 bp upstream
Tssr11748	transcription start site region 11748	1053 bp upstream
Tssr11749	transcription start site region 11749	1029 bp upstream
Tssr11750	transcription start site region 11750	1011 bp upstream
Tssr11751	transcription start site region 11751	649 bp upstream
Tssr11752	transcription start site region 11752	619 bp upstream
Tssr11753	transcription start site region 11753	598 bp upstream
Tssr11754	transcription start site region 11754	577 bp upstream
Tssr11755	transcription start site region 11755	146 bp upstream
Tssr11756	transcription start site region 11756	104 bp upstream
Tssr11757	transcription start site region 11757	79 bp downstream