rs240006874 SNP Detail

Summary

• ID
  rs240006874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:60195764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGCCTGC ATGCCCTGGG CAGGgaaatg
  aggttcaggg agagcctggc tggtctggaa ctcactgcgg agaccaggct agcctcagat
  ttggagcagt cctcctgcct ctgcctccca acttctggga ccccaggtgt gAACTTTTGG
  W
  AAAGAAGCCA CACGCTTTCA GTCTTGAGAA CAGAGACACA AGATGGTAGA GCATTTCGGG
  CTGAGGAGGC TGGGGACTTT TCTGCTCCTG AGACTCTAAG GGTGAGGTGG AAGCCTTGAA
  CTTGACCTCC GAGGTGGGTT AGTCTTTCTT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325150	CHEV_10_59822733	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240006874					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60195764 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdh23	cadherin related 23 (otocadherin)			Intron
				Noncoding-Transcript-Variant
Tssr93621	transcription start site region 93621			1948 bp downstream
Tssr93622	transcription start site region 93622			1864 bp downstream
Tssr93623	transcription start site region 93623			1500 bp downstream
Tssr97721	transcription start site region 97721			1885 bp upstream
Tssr97722	transcription start site region 97722			1751 bp upstream
Tssr97723	transcription start site region 97723			1719 bp upstream
Vsir	V-set immunoregulatory receptor			Intron
				Noncoding-Transcript-Variant