rs240012272 SNP Detail

Summary

• ID
  rs240012272
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56675909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG AAGTGTTTGT TCTTGAAATC
  W
  GGAAGGGAAG GAGCAGCTCC ACGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319732775	CHEV_1_56693594	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240012272					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56675909 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	within coordinates
Hsfy2	heat shock transcription factor, Y-linked 2	within coordinates
Tssr11733	transcription start site region 11733	658 bp downstream
Tssr11734	transcription start site region 11734	675 bp downstream
Tssr11735	transcription start site region 11735	680 bp downstream
Tssr11736	transcription start site region 11736	705 bp downstream
Tssr11737	transcription start site region 11737	711 bp downstream