rs240012273 SNP Detail

Summary

• ID
  rs240012273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31956299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGTCCA TAAGATGGGG
  AAGCCCCGAT GGCCATCATG GCCCAGCCAC TCTAGAATCA GAACCTAATT TATTTATCCA
  CATTGGCCAC AGGCAGCGCC CAAGAGCCCC TTTCCAAGAA AGCCTGGGTT TCATCCAAGT
  CCACACAAAT GACCTTGTGC CAGGAGTCCA CCATCAGGAC ACAGAGTCAC TCTAGCAACT
  R
  TGAGTCCCCC AACTTTCCAC ACAAATGTTC CAAAAGCTGG GGCCACTCAG CTGAGTGCCT
  GCTGCACACG GGAAAGGACC AGAAGGGATT TCTCAAACCC AAGTAAAGCT GGGCACCGTG
  GTGTAAGCCC GCAACCCCAG CACTGGGCCA CTGGGACTTG CTGGGCAGCC AGTCTAACCT
  ATTGGTGAGT CCAAGGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550519	MGP_WTSI_2_31921807	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240012273					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550519	MGP_WTSI_2_31921807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31956299 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	1376 bp upstream
Rr367162	regulatory region 367162	1118 bp downstream
Rr554786	regulatory region 554786	1690 bp distal
Rr554787	regulatory region 554787	405 bp distal
Rr554788	regulatory region 554788	within coordinates
Tssr23449	transcription start site region 23449	1204 bp upstream
Tssr23450	transcription start site region 23450	1168 bp upstream
Tssr23451	transcription start site region 23451	924 bp upstream
Tssr23452	transcription start site region 23452	850 bp upstream
Tssr23453	transcription start site region 23453	830 bp upstream