rs240016840 SNP Detail

Summary

• ID
  rs240016840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67855433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCTGGC TTCTTTCCCA
  ATGGACCCAG CTTTCATTCC TAGCACTCAC ATGGGACTCA CGTCTGTCTG TAACTCTAGT
  CCTGGGGGAT CTGATGCTCT TTTCCGGCCT CCTTGGGCAC TGGTTCACAG ATATGCGCTC
  TGAGCAAAAC ACCCACGCAG GTTTTTTTGT TTGTTTGTTT TTTTTTTTAA GCAACCCTTT
  Y
  CCCAAACTTT GATACACTTT AAGATTCTTT CCTTACTGTG TTAGCAAAAA TTCAGTTACA
  GGCTAGAGAG ATGCCTCCGT GGTTAAGAGC ATGGGCTGTT CCTCCGAAGG ACCAGGGTTC
  AATCTCAGCA TCCATATGGC AGGGCAAAAT ACTAATGCAC ATAAAGTAAA TTACTTAAAA
  AAAAATCAAT CACAGATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323722458	CHEV_11_67778109	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240016840					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67855433 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	827 bp proximal
Cpgi3073	CpG island 3073	1717 bp proximal
Rr449567	regulatory region 449567	1502 bp distal
Rr449568	regulatory region 449568	291 bp distal
Rr449569	regulatory region 449569	1025 bp proximal
Rr449570	regulatory region 449570	1884 bp proximal
Stx8	syntaxin 8	1804 bp upstream
Tssr102288	transcription start site region 102288	1835 bp upstream
Tssr108559	transcription start site region 108559	999 bp downstream
Tssr108560	transcription start site region 108560	1024 bp downstream