rs240018048 SNP Detail

Summary

• ID
  rs240018048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184543773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATGTTTGC AGAGTTGTTT ATTTGACCTA
  AAACACACAA CGTTTGCAGA ACGTGGCGTG ATTTTGAAAT TAGAAACCAG GCTGCGGGCA
  GCCGCCCCTC TGGGGTCTGT GGGGAGCAGT TTGGCAGCAG CCAGGGTGCT TCCAACCAGC
  Y
  GGGATATGAA GGGAAAAGAT CTGACCAGCC TTGAGGATCT ACAGGGCCAA TCCTGGGCTG
  CAGCTATTCG TAGACACCCG CCCCCCGCAC CCCCCACCCA CACGCCCCTC TTTTCCCTGC
  GTCCTAATGT GGACTTGCAC TGCCAGGTAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169574	CHEV_1_186635455	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240018048					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184543773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	239 bp distal
Gm70890	predicted gene, 70890	348 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	379 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	1492 bp downstream
Rr425290	regulatory region 425290	within coordinates
Rr425291	regulatory region 425291	359 bp proximal
Rr425292	regulatory region 425292	772 bp proximal
Rr425293	regulatory region 425293	920 bp proximal
Tssr15650	transcription start site region 15650	585 bp upstream
Tssr15651	transcription start site region 15651	413 bp upstream
Tssr15652	transcription start site region 15652	373 bp upstream
Tssr15653	transcription start site region 15653	312 bp upstream
Tssr15654	transcription start site region 15654	273 bp upstream
Tssr15655	transcription start site region 15655	262 bp upstream