rs240020804 SNP Detail

Summary

• ID
  rs240020804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49427122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATCCAC CCTCAAAGAT
  GGAATAAAAA TAAGCTGCCC CCTGCTCGAA TGAAGTGCGC TGTGTAAGCT TGGAGATTAA
  TTTTAAAATT GACAAGGAAT AATCTACACT TCTCCAGCAA CTCTTCTGCT GAAATTGCTC
  GCTCTACAAT TCTTGTCCTT TTTTTTTTTT GAGTGAGTAG GTAGTGGATG AGAGCTGAGG
  Y
  CTACGAGGTC ACCACTATGT AAACTAACAG ATCACATTTA CTCTGGTGTG CTCTTCTATT
  CATTACTTTC CTAAGACTAC ACATTTGCAA ATTTATATGT GTGAGGTTAA ATTGATTAGG
  AGGGAAAATT ATACTGGTGG GGGGATTTGT TTCCGGTCTG AGACCACTGG CTGCCTGCCC
  TCTGTCTTCT GAAGGTAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324031620	CHEV_12_50481326	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240020804					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49427122 () rs orientation: forward

Symbol	Name	Function Class
Gm34304	predicted gene, 34304	within coordinates
Gm56518	predicted gene, 56518	within coordinates
Rr465759	regulatory region 465759	1577 bp proximal
Tssr113389	transcription start site region 113389	1635 bp upstream
Tssr113390	transcription start site region 113390	1718 bp upstream
Tssr116231	transcription start site region 116231	1485 bp downstream