rs240028227 SNP Detail

Summary

• ID
  rs240028227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137888692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcagctgga gtcatggctt ctcccatgtg
  tgtactcttt ggttggcggt aaagagtcct gggagctctg ggggacctTT TTTCTATAAA
  AATTAACCAC TGCCCACTAT GTCAATGCCA CCGTCTGTAG TCATGATAGG ACTGTAAGTT
  Y
  TTCATGAACA GGATCCTCGC TTCAATTCTG GCTCAATGGT TTATTTCAGT GTTTGTTCTA
  AGTTTCACGT TATTGTGACT TTCAGTCATT GTGAGCTCTA TGGAAACATA ATTTAACCCT
  AGTTAATTTT TCATATCAAT GAGTTATTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319999624	CHEV_1_139857531	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240028227					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137888692 () rs orientation: forward

Symbol	Name	Function Class
C530045E16Rik	RIKEN cDNA C530045E16 gene	327 bp downstream
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Tssr9129	transcription start site region 9129	451 bp downstream
Tssr9130	transcription start site region 9130	516 bp upstream