rs240031503 SNP Detail

Summary

• ID
  rs240031503
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137637497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTGAAT CTGTATTGGT
  ATCAGACTGT TGGAAACAGG CTCCAAAATT TATCTATGAA GCAGAGCTAT ACTCCTTTTC
  CTCCTAGGTC CTTCCTCTCC AGAGTCTGTT TTGAGACCTC GGCCGTTTCC TCAGGAGAAG
  GAGCTAATAT CCCAACTTCG CCAGGTGAGC AAAGTGATAT TCACGGAGGC CTGGCCCAGC
  M
  TGGCGTCTCC TTCCCCTCTC CTTCCTCAGC CCACAACTCC TGTTATCGAG GAGGGGAAGG
  GATGGAGGGA GTGACCTTGC TGACCCCAGC TGCTGCTTCT GTCTCTGCTT CCAGGTCCTA
  GAGTCGCGGC TGCAGCAGCC CCTACCTGAG GACCTGGCAG AAGCTCTCGC CAACGGAGTC
  CTCCTTTGCC AGCTGGCGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702652	CHEV_5_138080463	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240031503					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137637497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	1880 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Rr622927	regulatory region 622927	1904 bp proximal
Rr622928	regulatory region 622928	1996 bp proximal
Tssr49363	transcription start site region 49363	728 bp downstream