rs240039211 SNP Detail

Summary

• ID
  rs240039211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10376531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGTACCAC CATTGCGCCC
  AAGGCCCGGG AAGCTCATTA GCCCTTGCGC CACGCCCGTG AAAAAGTGCG GGTAGACCCC
  GCAGATCAGA TTGGGCGGAT CTTCCGCTCC ATTCCTATAG ATCATGAAGG ACCTGGTTTT
  TCTTGATATG GGCCAGGGAA ACCCCACCCT ACGGGAACCT GTCCTGGCCA GGTGTCCCAC
  Y
  AGAAGCCCAG CGAGCTTCGT CACTCGCATT CCTGTAGATT GCAGCTGGTA GATCCCCGGC
  AGTCCAAACT TAACTCCCAG CATTTTTGGG TGTGGTACGG GCCCAAAGAA AACCTCTTCT
  TCTCTCCCCC AAGAACAGAT TTTTTTTTTT TTGAGAGTCT TCATATAAAA GCACAATTAA
  AGTACAGGGT GGGGTAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353068957	MGP_WTSI_2_10293347	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240039211					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353068957	MGP_WTSI_2_10293347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10376531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	2 bp distal
Cpgi11194	CpG island 11194	464 bp proximal
Gm74532	predicted gene, 74532	120 bp downstream
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	1203 bp downstream
Tssr16084	transcription start site region 16084	432 bp downstream
Tssr16085	transcription start site region 16085	365 bp downstream
Tssr16086	transcription start site region 16086	106 bp downstream
Tssr16087	transcription start site region 16087	616 bp upstream
Tssr16088	transcription start site region 16088	706 bp upstream
Tssr16089	transcription start site region 16089	831 bp upstream