rs240046228 SNP Detail

Summary

• ID
  rs240046228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19917691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGAAGT GTAAACTTAG
  CACCACAGAA AGATAAAAGG GACCGATACA CCTTCAATGG TTGTAGACAC ACACCTGCCT
  TGAATCATAC CAAGATTCAG CTACAGAAAC TAAAATAATG GAAATGTTAT TGTCTAGCAA
  CCTCATTATG GCCTACATTT GAGCATCGGT GAGACTATTT TCAAATTGCT TTTGAAAAGA
  Y
  AAGCATCACC TGTACCTGTG CTGATACTCA ATTGTCCAAC AGTGCTTATC ACTTTGAAGA
  CGTAAAGGAA CCGAATCTAC TTGTAACAGA CCCATTTGCT TAATCGTTTG AATAAAACTT
  AAACAAAAGA CAAAATTTTG GCTCTTACTA AGAAATAGAA ATTTTTTTTT ATCAGCTCAA
  CTCAGCTAGA GAAAGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324279231	CHEV_13_19825390	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240046228					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19917691 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	570 bp upstream
Tssr121608	transcription start site region 121608	766 bp upstream
Tssr121609	transcription start site region 121609	706 bp upstream
Tssr121610	transcription start site region 121610	567 bp upstream