rs240047301 SNP Detail

Summary

• ID
  rs240047301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25154720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGAAG TCCTGCCTCA
  TCAAAGCTGG CTCCTCGAGA AAAAAGGTAA GTGGTAAGGA GAGGGCTGCT GGCATGGAGG
  TCTTCTCCGT AAATCACAGG AGAATGGGGT TGTGTGCTCA GGCCAGGTCC AGGGCCTCTG
  TGAACTGTGA CAGCCCCAGG CTGGGGTTGG TCAGCCTACT GTTTACTTCA GAGATTTGGG
  R
  GAAGTAGTGC AGAGTTCCAG AATCCCTTTG GAATGGGTAA TTCCAACTAA TTGCAGGTCT
  ACCTTCAGAA AATAGCCTGG CCTGTGATTT GGAGGTAGCT GGCATAGTCC TATGGAGTTT
  AGCTTGGACA GATATCCAGA GCCTGGATGT AAATGGGAGG AAGAAAGCCA GTCATTCTTT
  TGCAGGTCCT CCTGACTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss353405739	MGP_WTSI_2_25120228	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs240047301					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405739	MGP_WTSI_2_25120228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25154720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	766 bp distal
Tprn	taperin	within coordinates
Tssr16682	transcription start site region 16682	1498 bp downstream
Tssr16683	transcription start site region 16683	1489 bp downstream
Tssr16684	transcription start site region 16684	1361 bp downstream
Tssr16685	transcription start site region 16685	1340 bp downstream
Tssr16686	transcription start site region 16686	1327 bp downstream
Tssr16687	transcription start site region 16687	777 bp downstream
Tssr16688	transcription start site region 16688	418 bp downstream
Tssr16689	transcription start site region 16689	395 bp downstream
Tssr16690	transcription start site region 16690	849 bp upstream