rs240051592 SNP Detail

Summary

• ID
  rs240051592
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG GGAGCATTTC CTCTGAAATG
  K
  GTGGAGGGAA AGGAGGAGGC CACAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002891	CHEV_3_142223138	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240051592					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265935 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	136 bp upstream
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	248 bp proximal
Rr586455	regulatory region 586455	655 bp proximal
Tssr32157	transcription start site region 32157	69 bp downstream
Tssr32158	transcription start site region 32158	40 bp downstream
Tssr32159	transcription start site region 32159	8 bp downstream
Tssr32160	transcription start site region 32160	19 bp upstream
Tssr32161	transcription start site region 32161	177 bp upstream
Tssr32162	transcription start site region 32162	364 bp upstream
Tssr32163	transcription start site region 32163	398 bp upstream
Tssr32164	transcription start site region 32164	431 bp upstream
Tssr32165	transcription start site region 32165	447 bp upstream
Tssr32166	transcription start site region 32166	783 bp upstream
Tssr32167	transcription start site region 32167	1510 bp upstream