rs240054009 SNP Detail

Summary

• ID
  rs240054009
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGGCCT TAATGAGGAA
  AACATCTCTG GGAAACCTGC TACCACTCAG TCGATGGGTC GATGTCAGTA AGCCACTGGC
  AAGGTCAGCC CCACAGAGAC AGCCACATGT TTGAGGGCAG CAACATGTGG GAACTGGACA
  AAGGCCTCCA GTAACAAAGC ACACAGCCGA CAGTGAGCAG CAGGACCCTC CCACCCCTCG
  M
  GTCAGGACAG TTGGAGTCCT TGCTGGGTTC CGTGGACAGT GTTCACCATG TTATAACACT
  TTAGTTCTGG GCTGCCAAAC TTGATTTTAT TCAAATCAGA ACCTATGGCT GCTGGTGGCA
  TGGTGGGTCT GTGTGACCAT CTAAGGAGTG AGCATAGTGT CCTAGCTAAG CCATTCATGG
  AGACTGAGGT TAGTCCGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322503683	CHEV_8_13038609	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240054009					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088609 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1277 bp distal
Rr659844	regulatory region 659844	761 bp distal
Rr659845	regulatory region 659845	within coordinates
Rr659846	regulatory region 659846	1945 bp proximal
Tssr76325	transcription start site region 76325	1306 bp downstream
Tssr76326	transcription start site region 76326	1257 bp downstream
Tssr76327	transcription start site region 76327	1247 bp downstream
Tssr76328	transcription start site region 76328	1219 bp downstream
Tssr76329	transcription start site region 76329	771 bp downstream
Tssr76330	transcription start site region 76330	624 bp downstream
Tssr76331	transcription start site region 76331	694 bp upstream
Tssr76332	transcription start site region 76332	717 bp upstream
Tssr76333	transcription start site region 76333	749 bp upstream
Tssr76334	transcription start site region 76334	760 bp upstream
Tssr76335	transcription start site region 76335	928 bp upstream