rs240072588 SNP Detail

Summary

• ID
  rs240072588
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44507905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAGTCCC AGGACAGGCA
  AGCAAGGGAC TAGGCGTCTG CCCAAAGAGA ACGCAGTCAG TACGCCTCCG TCGCGCTCAG
  GGCTCGGAAG GGATGCTTAA GAACTGCCAT GGTGCATACC CCTTCGACTC AGGATACCTC
  CATCTCCTTC CCTCTGCCCC CTCTCTCGCT CTCTAAGGCC ACGCTCCTTC CAGTTTAGAC
  S
  CTAGAGCTCA GAGATCCCTT GCTCGCCACT TTGCCGGGAA CTTTGGCGGC TCCCCTGCGC
  CACAAGGAGA AGGATGTTAA TGAGGGAGTG TGGCCAGGCT CTGTGAACAA GCCAGCTCGG
  GAGCTGCGAT TGGCTGTGAT AAGGCGGAAG GATGACGTTA TGCAAAGAAG GGGCGTGTCT
  AGGCTGCGAG GGCCCCGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201268	MGP_WTSI_11_44430580	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240072588					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201268	MGP_WTSI_11_44430580	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44507905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	within coordinates
Cpgi2763	CpG island 2763	1067 bp proximal
Ebf1	early B cell factor 1	239 bp upstream
Gm37695	predicted gene, 37695	62 bp upstream
Rr369170	regulatory region 369170	within coordinates
Rr445653	regulatory region 445653	within coordinates
Rr445654	regulatory region 445654	250 bp proximal
Tssr101029	transcription start site region 101029	208 bp upstream
Tssr101030	transcription start site region 101030	232 bp upstream
Tssr101031	transcription start site region 101031	276 bp upstream
Tssr101032	transcription start site region 101032	297 bp upstream
Tssr101033	transcription start site region 101033	409 bp upstream
Tssr101034	transcription start site region 101034	436 bp upstream
Tssr101035	transcription start site region 101035	473 bp upstream
Tssr101036	transcription start site region 101036	535 bp upstream
Tssr101037	transcription start site region 101037	569 bp upstream
Tssr101038	transcription start site region 101038	611 bp upstream
Tssr101039	transcription start site region 101039	789 bp upstream
Tssr101040	transcription start site region 101040	850 bp upstream
Tssr101041	transcription start site region 101041	1046 bp upstream
Tssr101042	transcription start site region 101042	1107 bp upstream
Tssr101043	transcription start site region 101043	1130 bp upstream
Tssr101044	transcription start site region 101044	1500 bp upstream
Tssr107570	transcription start site region 107570	987 bp downstream