rs240082925 SNP Detail

Summary

• ID
  rs240082925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAATCTG TTAGGAACTG
  AAGTTTGACC GGCCTTTCCA TATGGAGATG TCCTTGCTGA AGGCCATGCC ATTCTCCCAA
  GCGGCAGGTA AGTTTAAAGA CTCAAAGATG CATCTTCCTC ACTGTTGGAG AACACAGAAG
  TGATCTATGT ACTGATAGAT AGATAAGCTA GACCCAAGGA TGTAGAAAGA ACAGGATGAC
  R
  TAGTGACCAT TAAAGTCTCT TTATACAGAC ATCTGCTTTC TACCTGTTCC TTCATATCAA
  TTCTCATGAG CAAGACAGAT GTGCAAGACA GATGTGAAAA GGAGAATCCC TTTCTTCTTG
  TTGCATTTGT TAGAGAATTG ATCTGTACAG TCTAAAAAGA GGTCTTTCAG GTTATGGCAA
  GACCATCAGA CAATGCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922398	MGP_WTSI_6_123233188	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240082925					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922398	MGP_WTSI_6_123233188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260129 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	mRNA-UTR
Tssr58808	transcription start site region 58808	390 bp downstream
Tssr58809	transcription start site region 58809	222 bp upstream
Tssr58810	transcription start site region 58810	248 bp upstream
Tssr58811	transcription start site region 58811	284 bp upstream
Tssr63019	transcription start site region 63019	1598 bp upstream
Tssr63020	transcription start site region 63020	666 bp upstream
Tssr63021	transcription start site region 63021	588 bp upstream
Tssr63022	transcription start site region 63022	549 bp upstream
Tssr63023	transcription start site region 63023	494 bp upstream
Tssr63024	transcription start site region 63024	396 bp upstream
Tssr63025	transcription start site region 63025	364 bp upstream
Tssr63026	transcription start site region 63026	343 bp upstream
Tssr63027	transcription start site region 63027	305 bp upstream
Tssr63028	transcription start site region 63028	280 bp upstream
Tssr63029	transcription start site region 63029	252 bp upstream
Tssr63030	transcription start site region 63030	196 bp upstream
Tssr63031	transcription start site region 63031	166 bp upstream
Tssr63032	transcription start site region 63032	135 bp upstream
Tssr63033	transcription start site region 63033	121 bp upstream
Tssr63034	transcription start site region 63034	95 bp upstream
Tssr63035	transcription start site region 63035	80 bp upstream
Tssr63036	transcription start site region 63036	13 bp upstream
Tssr63037	transcription start site region 63037	within coordinates
Tssr63038	transcription start site region 63038	29 bp downstream
Tssr63039	transcription start site region 63039	88 bp downstream
Tssr63040	transcription start site region 63040	146 bp downstream
Tssr63041	transcription start site region 63041	195 bp downstream
Tssr63042	transcription start site region 63042	220 bp downstream
Tssr63043	transcription start site region 63043	230 bp downstream
Tssr63044	transcription start site region 63044	252 bp downstream
Tssr63045	transcription start site region 63045	343 bp downstream
Tssr63046	transcription start site region 63046	362 bp downstream
Tssr63047	transcription start site region 63047	385 bp downstream
Tssr63048	transcription start site region 63048	413 bp downstream
Tssr63049	transcription start site region 63049	428 bp downstream
Tssr63050	transcription start site region 63050	452 bp downstream
Tssr63051	transcription start site region 63051	504 bp downstream