rs240089500 SNP Detail

Summary

• ID
  rs240089500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151385123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGACATGG GGTTGGCGCA
  GTCTCGTCCG CCCTGAACGG TGTGCGGCCC CGGATGCCGC AGGGAGCCTA CTGTCCAACC
  GTAGAAACTG AGGCTGGGGC GAACTCATCG CCTGGCGGAG GTCACACGCT CCCGGCCAGG
  GACCCTTCGG GAAGATTTGA ACCGTTTCTG AACCCCGATG GCTTGATGCC TTCTTCGTGC
  K
  TCGGGATTCT TCCTTCAGTA GATAGAAGGG GAGAAAATTC CTAGTCTGCC CAGCCACCCT
  TTCCCAGGGA AACCCTTGAA TTCACCTTTC TGGGGCGGGT GGGAAACGAC CCACTTGCGA
  AGTCATTATT GTGGCTTCAC GTGCCCTCTC AGAAATAGAT AATGCAATGT CTATTTCTCT
  TTGACCCACT TGCAAATCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356131741	MGP_WTSI_2_151368939	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	T	T	T	G	T	G	T	G	G	T	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240089500					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	T	T	T	G	T	G	T	G	G	T	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356131741	MGP_WTSI_2_151368939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151385123 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fkbp1a	FK506 binding protein 1a			Intron
				Noncoding-Transcript-Variant
Gm14167	predicted gene 14167			732 bp upstream
Rr397389	regulatory region 397389			790 bp downstream
Rr397390	regulatory region 397390			510 bp upstream
Rr567163	regulatory region 567163			747 bp distal
Rr567164	regulatory region 567164			710 bp distal
Rr567165	regulatory region 567165			170 bp distal
Tssr20724	transcription start site region 20724			700 bp downstream
Tssr20725	transcription start site region 20725			688 bp downstream
Tssr20726	transcription start site region 20726			557 bp downstream
Tssr20727	transcription start site region 20727			533 bp downstream
Tssr20728	transcription start site region 20728			508 bp downstream
Tssr20729	transcription start site region 20729			380 bp downstream
Tssr20730	transcription start site region 20730			466 bp upstream
Tssr20731	transcription start site region 20731			674 bp upstream
Tssr20732	transcription start site region 20732			753 bp upstream
Tssr26737	transcription start site region 26737			849 bp upstream
Tssr26738	transcription start site region 26738			716 bp upstream