rs240090621 SNP Detail

Summary

• ID
  rs240090621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90601516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGACTCT GACACACACA
  CACAGACACT CTCCCCCCTC CTTTTAGTTG TCCCCTTCCA TGTTGGTCAT GGTGGCCATC
  TCTGCTATTC TTTCACTTCA TGCTACTTTC TTTAATGTCC TCACAATGAA TATAAAAGTT
  CTTTTACCTA AAGGCTGGAC TATGGCCTTC ATCGTCTTGA TGATCTCTAT TGTAATAAAG
  Y
  CCATCTTGAA GGGTAGTGGG TTTTAACTTC CTTCTCCAGG AACTAACTGA ACCTGTCATC
  TCATTGTTTT AAGATCCCTT GAGTCTTTAA CCAGGGACTA GGTTTCATTT AAAGTATTAC
  TCCCTCAAAG GCTCTTTCTC TGTCTCTCTC TTTCTCCTTA CCTACTATCT ATTTATTGTT
  TAAAATTTTT TTAATTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358838081	MGP_WTSI_3_90498131	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240090621					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358838081	MGP_WTSI_3_90498131	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90601516 () rs orientation: forward

Symbol	Name	Function Class
S100a9	S100 calcium binding protein A9 (calgranulin B)	within coordinates
Tssr949	transcription start site region 949	1419 bp downstream
Tssr950	transcription start site region 950	1288 bp upstream
Tssr951	transcription start site region 951	within coordinates
Tssr952	transcription start site region 952	913 bp upstream
Tssr953	transcription start site region 953	959 bp downstream
Tssr954	transcription start site region 954	1784 bp upstream
Tssr30268	transcription start site region 30268	1571 bp downstream
Tssr30269	transcription start site region 30269	1460 bp downstream
Tssr30270	transcription start site region 30270	1312 bp downstream
Tssr30271	transcription start site region 30271	1825 bp upstream
Tssr34252	transcription start site region 34252	1476 bp upstream
Tssr34253	transcription start site region 34253	1344 bp upstream
Tssr34254	transcription start site region 34254	745 bp downstream
Tssr34255	transcription start site region 34255	840 bp downstream
Tssr34256	transcription start site region 34256	915 bp downstream
Tssr34257	transcription start site region 34257	975 bp downstream
Tssr34258	transcription start site region 34258	1036 bp downstream
Tssr34259	transcription start site region 34259	1163 bp downstream
Tssr34260	transcription start site region 34260	1475 bp downstream
Tssr34261	transcription start site region 34261	1497 bp downstream
Tssr34262	transcription start site region 34262	1547 bp downstream
Tssr34263	transcription start site region 34263	1579 bp downstream