rs240092250 SNP Detail

Summary

• ID
  rs240092250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4644588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGGCGGT TATTCTTATG
  ACTGGTGTGC TGCTGCTGTT CCAAGTAATG CTGGTAACCA TTTAACGAAG TTAAAAAAAT
  GTTCAACATA TCCAAAGGCT CAAATCCCGA TATTTCCTGA GTGTGAGGAG ATATGTACAT
  TCAGGGGATT GGATTTGTAC TTTAAAAATG CATTTTTACA AAAACAGAGT AACACACACC
  Y
  TTTGCCCAAA CTTAGAGAAT TTTTCAAGAA TTTATTTTGG TCATTTTATC CTATACAAAG
  TGGACATTTT TTTATATAAT CTTAGAAATT TTAGAGGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTATTAAG GAGTAAAACG ACCATTTTAC ATATTCTCAG CATGCTGTCT GCTACCAGGG
  GCATGAAATC TCAAGATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384997248	MGP_WTSI_12_4601394	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240092250					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384997248	MGP_WTSI_12_4601394	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4644588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	664 bp distal
Gm3625	predicted gene 3625	857 bp upstream
Gm48678	predicted gene, 48678	752 bp downstream
Itsn2	intersectin 2	within coordinates
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	756 bp downstream
Tssr112557	transcription start site region 112557	1940 bp downstream
Tssr112558	transcription start site region 112558	1915 bp downstream
Tssr112559	transcription start site region 112559	1752 bp downstream
Tssr112560	transcription start site region 112560	1643 bp downstream
Tssr112561	transcription start site region 112561	1501 bp downstream
Tssr112562	transcription start site region 112562	1441 bp downstream
Tssr112563	transcription start site region 112563	724 bp downstream
Tssr115638	transcription start site region 115638	893 bp upstream
Tssr115639	transcription start site region 115639	852 bp upstream
Tssr115640	transcription start site region 115640	835 bp upstream
Tssr115641	transcription start site region 115641	798 bp upstream
Tssr115642	transcription start site region 115642	776 bp upstream
Tssr115643	transcription start site region 115643	565 bp downstream