rs240096588 SNP Detail

Summary

• ID
  rs240096588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:76193720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTCAGT ATCCACATGG
  TGGCTCACAA CCATCCTTAA TGAGAAACAA ATAAGAAAAC CTACGGGCTG GAGTGAGTGG
  GGCCGGAGTG AAAGGGAAGA GGGAGGGAGG GGGAAAAAGT GTATGTATAC ACACACACAC
  ACACACACAC ACACATATAT ATATAAAATG GAGGCTCAGT GGGGGGGGGG GGGGGGGGGG
  W
  AACGCTTGCC ATGCAAGCAT GAAGAGCTGA GTTTAAACCC AGAGCCTGAG AAAAGCTAGA
  GAAAAGCTGT ATGTCTATAA TCCTAACGAT CCTAAGCAAG ATGGGAGGGC AGTGACAGGA
  GAATAATTCC CAGAAGCTCA AGGGCCAGCT AACATGGTGT ACACAGTGTG AACAGTGAAA
  AGAGACTTTA AATACAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss391595401	MGP_WTSI_14_76356087	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs240096588					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391595401	MGP_WTSI_14_76356087	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76193720 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f2	general transcription factor IIF, polypeptide 2	Intron
Kctd4	potassium channel tetramerisation domain containing 4	Intron
Rr389861	regulatory region 389861	876 bp downstream
Tssr126694	transcription start site region 126694	1264 bp downstream
Tssr126695	transcription start site region 126695	1217 bp downstream