rs240096819 SNP Detail

Summary

• ID
  rs240096819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174316167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATTAGA CAGGAAGGAA
  ATAATATGGT TGGTAGCTGC TAAGTGTAAT TTGTTTTACC TGGGGGATTA TATATATATA
  TATTCAGTAC TTTGAGTGAT TTCTTGGGGA GATAATGTTT TAAGGGCTGC TGAGAGGGCC
  CCAGCCTTTG TTAAGATGTG AAGTTAGTGC TGTGTATTAC TGGCTCTAGT GCAGTCACTA
  Y
  AGAACAGTCA GTCCCTGCTG CCCTAGAGCT TCATGAAGCT GTTCACCAGC TAGCTGGCCA
  GCCTCCTCTG CCTCCTCCTC CTCCTCCTCC TCCTCTTCCT CTTTTCTCTT TTCTTTCTTT
  GCCCCCAGTT CAAGATTTTT TCTTTGTCAA AGTCATACCA GAAAACTTAC TTCTTTTCCA
  TTGCTCTCCA AAACATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356690984	MGP_WTSI_2_174299875	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240096819					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356690984	MGP_WTSI_2_174299875	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174316167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	902 bp distal
Gm38546	predicted gene, 38546	265 bp downstream
Gm52540	predicted gene, 52540	1672 bp downstream
Prelid3b	PRELI domain containing 3B	1433 bp upstream
Rr397557	regulatory region 397557	1196 bp downstream
Rr572133	regulatory region 572133	1487 bp distal
Rr572134	regulatory region 572134	1751 bp distal
Rr572135	regulatory region 572135	1384 bp distal
Rr572136	regulatory region 572136	1356 bp distal
Rr572137	regulatory region 572137	1179 bp distal
Rr572138	regulatory region 572138	389 bp distal
Tssr28035	transcription start site region 28035	1438 bp upstream
Tssr28036	transcription start site region 28036	1355 bp upstream