rs240099865 SNP Detail

Summary

• ID
  rs240099865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:64943795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACAGAA GCAGGCTCTG
  TGAGTACCTG CCTAGAGGCA CTGTGGCAAC CAAGTCTTTG GTTTGGGGGC AGATTACAAT
  GTGCTGGGGA TATTTGCTTC TGTGAAGATG ATGTTCTTTA ATGCTGTCCT TTTCTTAGAG
  TTGCAAAAGT AAACTCATAT GAAAGCCCAA GAGAAGGAAG AGGAGGTGGG GGGGGGGGGG
  S
  GGGCAGTAAA GAGGAGGAGA GGGAGGGGAA GGAAGGGAAG GAGGAGCTAC CAGTTCTTTT
  GTCTGAAAGG TCTCATGAAA ACAAAACAAA AGAAAACAAA CAGAAAACAA ATAAACAGTG
  AATGGCAACT GCCACTGGAG TCCTGACCCA TGTTGCTAGT AAAATTCTCC AAACTGTAAC
  CATAGAATTT GAATAATTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CE/J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PWK/PhJ	QSi3/Ianm	SJL/J	WSB/EiJ
ss394338981	MGP_WTSI_15_64903508	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	G	C	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CE/J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PWK/PhJ	QSi3/Ianm	SJL/J	WSB/EiJ
rs240099865					SNP	C	C	C	C	C	C	C	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394338981	MGP_WTSI_15_64903508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64943795 () rs orientation: forward

Symbol	Name	Function Class
D15Mit234	DNA Segment, Chr 15, Massachusetts Institute of Technology 234	391 bp proximal