rs240101938 SNP Detail

Summary

• ID
  rs240101938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90965746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCCCGC TGCCCGCTGC
  CCCACCGACG CTCAGGGGCC GGTAGGGCAC GGAGCTGCGG CCGCCGCGGG CAGACGAGGA
  GTTTGCAAAG TGCCGGCTGC GACGCGAGAG GGAGCGGGAG CCCTAAGATC GTAGAGGGAG
  GAGGTGCCTG TGAGAGAGGG CGCCGCCTGC CGGGCCCGCC TCTCCACCCG CGCGGCGTGC
  Y
  GGGCTCCTCA GTGCCTCAGC AACTCGGAGC CACCACTGCT GAGCCCCTCA GCCTAGACCC
  AGCCCCGCCC CCTAAGCTCT TGTCCCTAGA GCCCCGCCCC CTCAGCCTCA GGTCCCTCCG
  CTCCTATCCT AGCGCTTAAC TTCAGCCCCG CCCCTTTGGC TCCTCAGCCC AATCCCCTAA
  ATCCATCAGT CCCGCCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369174250	MGP_WTSI_6_90938758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240101938					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369174250	MGP_WTSI_6_90938758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90965746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17729	CpG island 17729	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr399767	regulatory region 399767	294 bp upstream
Rr634357	regulatory region 634357	82 bp distal
Rr634358	regulatory region 634358	within coordinates
Rr634359	regulatory region 634359	23 bp distal
Tssr62060	transcription start site region 62060	316 bp upstream
Tssr62061	transcription start site region 62061	84 bp upstream
Tssr62062	transcription start site region 62062	72 bp upstream
Tssr62063	transcription start site region 62063	6 bp downstream