rs240105677 SNP Detail

Summary

• ID
  rs240105677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167616949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCCAC AGGGCCTGGG
  GCTGAGCCTG GGGTGGTGGG GATGGTGGTG GGCTGAGATT TAGCCAGAGC CTTGGGGCCC
  AGTGGGAGGC AGATCCACAT CTGCTAGCAA GACGTGTCAG CCAGGCCTGT CACACTGTGG
  AGGCTCATCC CTGAGGTATG TGGGAGCTGG GAGGTGCCGC GGGGTGGGCG GGTGATGCTG
  Y
  GGGGCGGAGC CAGCTGAGCT GCTGGGCGGC AAGGCTGCGT GCAGGTCCCA GGGACCCCAG
  CAATGATCCC TAACCTGCGA GTGGACCAAA GGGGTGGGGC TGGGGGAGGC AGAGGGCGGC
  AGGGTCTGCT CAGAGAGGCC TCAAACTCAC ACCTTAAGAG GGTGTATCAT TTCAAGCAGT
  GTCATAAGGG AAGGCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356511789	MGP_WTSI_2_167600529	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240105677					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356511789	MGP_WTSI_2_167600529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167616949 () rs orientation: forward

Symbol	Name	Function Class
Gm32287	predicted gene, 32287	within coordinates
Gm75068	predicted gene, 75068	1340 bp downstream
Rr56124	regulatory region 56124	251 bp proximal
Tssr770	transcription start site region 770	1895 bp downstream
Tssr771	transcription start site region 771	126 bp downstream
Tssr772	transcription start site region 772	641 bp upstream
Tssr773	transcription start site region 773	1726 bp upstream
Tssr21847	transcription start site region 21847	1870 bp downstream
Tssr21848	transcription start site region 21848	1837 bp downstream
Tssr21849	transcription start site region 21849	500 bp upstream
Tssr27800	transcription start site region 27800	1977 bp upstream
Tssr27801	transcription start site region 27801	60 bp upstream
Tssr27802	transcription start site region 27802	151 bp downstream
Tssr27803	transcription start site region 27803	175 bp downstream
Tssr27804	transcription start site region 27804	361 bp downstream
Tssr27805	transcription start site region 27805	438 bp downstream