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rs240105858 SNP Detail
Summary
  • ID
    rs240105858
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848051 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAACAGAAG ACAGAGGCAA
GCGCTTATAT GCAAAGTCCT GAGCAGCTCC ATGAAGGATG AAATGAGGCT CTGCAAAGGA
AAACTCTTTA AACCCACATG CCTGACCCCA CTCGTGGCTC AAGTGAGGTG ACAAAAGGCT
AAAGTGGATG AGATGATCGT AAGCATTTAA ACTCAACATG CATATTTGGA AATGTGGGGG
R
AAAGTGTCTT ACCCTAGATG TTTAGCCATG GTCAAATTAG ACCCCTGACT TTCTGGAAAC
AAAATATGTA GTTACCTTTT ACTCTGACCA TCATCTCCCA CCTGCCTAAG GTACTTAGTC
CTTAGTTAGA CGGCCTCTAT GCCAGGCCTG CAATTATTAA ATGCTCATCA CTGCATGGAG
AATAAAATTT GTCTTTCCTG                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662574 MGP_WTSI_19_5798023 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240105858 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662574 MGP_WTSI_19_5798023 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848051 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 977 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 within coordinates
Rr543162 regulatory region 543162 537 bp proximal
Rr543163 regulatory region 543163 1395 bp proximal
Tssr5415 transcription start site region 5415 1157 bp upstream
Tssr5416 transcription start site region 5416 708 bp upstream
Tssr5417 transcription start site region 5417 1003 bp downstream
Tssr5418 transcription start site region 5418 1486 bp downstream
Tssr157645 transcription start site region 157645 1642 bp upstream
Tssr157646 transcription start site region 157646 1540 bp upstream
Tssr157647 transcription start site region 157647 1453 bp upstream
Tssr157648 transcription start site region 157648 1286 bp upstream
Tssr157649 transcription start site region 157649 1194 bp upstream
Tssr157650 transcription start site region 157650 1129 bp upstream
Tssr157651 transcription start site region 157651 1059 bp upstream
Tssr157652 transcription start site region 157652 919 bp upstream
Tssr157653 transcription start site region 157653 835 bp upstream
Tssr157654 transcription start site region 157654 781 bp upstream
Tssr157655 transcription start site region 157655 755 bp upstream
Tssr157656 transcription start site region 157656 722 bp upstream
Tssr157657 transcription start site region 157657 602 bp upstream
Tssr157658 transcription start site region 157658 496 bp upstream
Tssr157659 transcription start site region 157659 392 bp upstream
Tssr157660 transcription start site region 157660 296 bp upstream
Tssr157661 transcription start site region 157661 263 bp upstream
Tssr157662 transcription start site region 157662 170 bp upstream
Tssr157663 transcription start site region 157663 109 bp upstream
Tssr157664 transcription start site region 157664 2 bp downstream
Tssr157665 transcription start site region 157665 9 bp downstream
Tssr157666 transcription start site region 157666 34 bp downstream
Tssr157667 transcription start site region 157667 287 bp downstream
Tssr157668 transcription start site region 157668 334 bp downstream
Tssr157669 transcription start site region 157669 349 bp downstream
Tssr157670 transcription start site region 157670 369 bp downstream
Tssr157671 transcription start site region 157671 386 bp downstream
Tssr157672 transcription start site region 157672 435 bp downstream
Tssr157673 transcription start site region 157673 452 bp downstream
Tssr157674 transcription start site region 157674 482 bp downstream
Tssr157675 transcription start site region 157675 501 bp downstream
Tssr157676 transcription start site region 157676 512 bp downstream
Tssr157677 transcription start site region 157677 534 bp downstream
Tssr157678 transcription start site region 157678 546 bp downstream
Tssr157679 transcription start site region 157679 583 bp downstream
Tssr157680 transcription start site region 157680 638 bp downstream
Tssr157681 transcription start site region 157681 667 bp downstream
Tssr157682 transcription start site region 157682 685 bp downstream
Tssr157683 transcription start site region 157683 711 bp downstream
Tssr157684 transcription start site region 157684 727 bp downstream
Tssr157685 transcription start site region 157685 737 bp downstream
Tssr157686 transcription start site region 157686 752 bp downstream
Tssr157687 transcription start site region 157687 821 bp downstream
Tssr157688 transcription start site region 157688 871 bp downstream
Tssr157689 transcription start site region 157689 902 bp downstream
Tssr157690 transcription start site region 157690 980 bp downstream
Tssr157691 transcription start site region 157691 1026 bp downstream
Tssr157692 transcription start site region 157692 1080 bp downstream
Tssr157693 transcription start site region 157693 1137 bp downstream
Tssr157694 transcription start site region 157694 1195 bp downstream
Tssr157695 transcription start site region 157695 1259 bp downstream
Tssr157696 transcription start site region 157696 1280 bp downstream
Tssr157697 transcription start site region 157697 1329 bp downstream
Tssr157698 transcription start site region 157698 1345 bp downstream
Tssr157699 transcription start site region 157699 1403 bp downstream
Tssr157700 transcription start site region 157700 1452 bp downstream
Tssr157701 transcription start site region 157701 1470 bp downstream
Tssr157702 transcription start site region 157702 1506 bp downstream
Tssr157703 transcription start site region 157703 1557 bp downstream
Tssr157704 transcription start site region 157704 1583 bp downstream
Tssr157705 transcription start site region 157705 1604 bp downstream
Tssr157706 transcription start site region 157706 1652 bp downstream
Tssr157707 transcription start site region 157707 1698 bp downstream
Tssr157708 transcription start site region 157708 1708 bp downstream
Tssr157709 transcription start site region 157709 1720 bp downstream
Tssr157710 transcription start site region 157710 1739 bp downstream
Tssr157711 transcription start site region 157711 1758 bp downstream
Tssr157712 transcription start site region 157712 1795 bp downstream
Tssr157713 transcription start site region 157713 1822 bp downstream
Tssr157714 transcription start site region 157714 1873 bp downstream
Tssr157715 transcription start site region 157715 1890 bp downstream
Tssr157716 transcription start site region 157716 1934 bp downstream
Tssr157717 transcription start site region 157717 1961 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory