rs240111878 SNP Detail

Summary

• ID
  rs240111878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTGCCT GGGGCCCCAT
  CTGAGATCTG AGATTGTTCT CTGCCCCACC CCACCACCTT CACACAAGCG CGCGTGCGCA
  CGCACACACA CGCACACACA CACACACACA CACACACACA GGTTGGAAGT TCCAATATAC
  GACACGTGAC TCAGGAACCC TCACATACCA ACATGAATCG CCCATACCAT GTCATCTCTG
  Y
  TCTCTGACTC CCAAACCAGA GCTGAGGAGG CAAAATTCCC AAGAATGATG TCAGTAAAGG
  GGCTACTGCT TCCTGAAAGG ATTGTCCCAC CTCAGTCTCC TTGCTCTCTG TGCACACACC
  CGCCCTCCTG TGTCCCAACT CTCACATCCA GCTGCATCAC AAACACTAGT AAAGAGTTTC
  ACTCTGTAGC CCAAGCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394653344	MGP_WTSI_15_78239146	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240111878					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394653344	MGP_WTSI_15_78239146	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	1771 bp distal
Cpgi7287	CpG island 7287	1156 bp proximal
Gm52185	predicted gene, 52185	1948 bp downstream
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505259	regulatory region 505259	1905 bp distal
Rr505260	regulatory region 505260	1370 bp distal
Rr505261	regulatory region 505261	776 bp proximal
Tssr131944	transcription start site region 131944	1984 bp downstream
Tssr131945	transcription start site region 131945	1920 bp downstream
Tssr131946	transcription start site region 131946	997 bp upstream
Tssr131947	transcription start site region 131947	1023 bp upstream
Tssr131948	transcription start site region 131948	1044 bp upstream
Tssr131949	transcription start site region 131949	1194 bp upstream
Tssr131950	transcription start site region 131950	1238 bp upstream
Tssr131951	transcription start site region 131951	1563 bp upstream