rs240128987 SNP Detail

Summary

• ID
  rs240128987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCTAGC TACACTCTAG
  GTTCCACTCC CCAGCATCCC TCCCTCCACC ATACCCAAAT GCAGGAGGAA GCAAAGGCAT
  AGGTGAGGGA TTATCACACA CACAAAGTGA GGGATTAGAA GTATACATGT AGCCGGGCCG
  TGGTGGTGTA CACCTTTAAT CCCAGTACTT GGGAGGCAGA GACAGGCAGA TTTCTGAGTT
  Y
  GAGGCCAGTC TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT
  GTTTCGAAAA AAAAAAAAAA AAGAAAAGAA AAGAAAGAAG TATACACGTG TAAAAACATG
  TAGTGCATGC AAATAGCATT AAAGTCATTT TGAGACTTGA ATTGAAAGGA GAGAGGTTAA
  AGCTGGGAGA ATTGCAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210104	MGP_WTSI_10_128184032	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240128987					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210104	MGP_WTSI_10_128184032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	726 bp proximal
Gm31504	predicted gene, 31504	1094 bp downstream
Gm66065	predicted gene, 66065	627 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	913 bp upstream
Rr224483	regulatory region 224483	644 bp distal
Rr224484	regulatory region 224484	355 bp proximal
Rr385481	regulatory region 385481	349 bp upstream
Tssr96441	transcription start site region 96441	1953 bp downstream
Tssr96442	transcription start site region 96442	1742 bp downstream
Tssr96443	transcription start site region 96443	502 bp downstream
Tssr96444	transcription start site region 96444	812 bp upstream
Tssr96445	transcription start site region 96445	874 bp upstream
Tssr96446	transcription start site region 96446	1525 bp upstream
Tssr96447	transcription start site region 96447	1775 bp upstream
Tssr99950	transcription start site region 99950	1918 bp upstream
Tssr99951	transcription start site region 99951	1895 bp upstream
Tssr99952	transcription start site region 99952	1891 bp upstream
Tssr99953	transcription start site region 99953	1854 bp upstream
Tssr99954	transcription start site region 99954	1510 bp upstream
Tssr99955	transcription start site region 99955	1477 bp upstream
Tssr99956	transcription start site region 99956	724 bp upstream
Tssr99957	transcription start site region 99957	664 bp upstream
Tssr99958	transcription start site region 99958	652 bp downstream
Tssr99959	transcription start site region 99959	744 bp downstream