rs240136722 SNP Detail

Summary

• ID
  rs240136722
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36898708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGCGCT GGAAGAGTGG
  GATTAGCTGG TGCTCGTACA CGTCCTGCGG AAGTCGTCCG ATATACACCT CGGACCCTGA
  CGGTGGCGGG CTGCCCACCC AGCCTGGAGG GAAAGGATTT TGTTGGTTAC TGTGGTCCAC
  AAGGATGTTT TTAAGCTCCA GGATAAAGCT GGGGGGGGGG GGTAGGGGTG GGGATGGGAG
  K
  GAGACCATCT GGAAATATTG ATACCTTTCT GGCTCCTGGG GGTCGTTACC ATAATTGGAC
  TAGACTATAA ACAACTAGGC TGGCACCATC CTTGAAGGCC AGTGTGGAAG GGAGGCCAGA
  CAAATAGCCA CATCTAGTAG AGAGTACGTC AGGTAATTTG GGTTTTCTGA CTTTGGATCC
  TATCTATAAA GAGTGGCCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss400282397	MGP_WTSI_18_36925309	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	G	G	G	G	T	G	G	T	G	T	T	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs240136722					SNP	G	G	T	G	G	G	G	G	G	T	G	G	T	G	T	T	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400282397	MGP_WTSI_18_36925309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36898708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	78 bp distal
Dnd1	DND microRNA-mediated repression inhibitor 1	within coordinates
Hars1	histidyl-tRNA synthetase 1	873 bp downstream
Rr352751	regulatory region 352751	107 bp distal
Tssr152972	transcription start site region 152972	537 bp downstream
Tssr152973	transcription start site region 152973	563 bp downstream
Wdr55	WD repeat domain 55	1947 bp downstream