rs240138616 SNP Detail

Summary

• ID
  rs240138616
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129228110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCTGG CTCAGCGGCT
  AAGAGCATTG ACTGCTCTTC CCAAGGTCCT GAGTTCAAAT CCCAGCAACC ACATGGTGGC
  TCACAACAAT CTGTAATGGG ACCCAATGCC CTCTTCTGGC TTCAGTGTAT TCATACAAAT
  AGAGATGACT TAAAAAAAAA AAGTAAAAGA AAAAGAAAAA AAAAAATCAA ACAACAACAC
  M
  ACAACAGAGC ATGTTTTCTT TGCAGGGTAA ATTACAAAAT GATCTTCTGT TTTTGACATT
  ATTTCTAGTC GAGGAAAATA AATAGTACTC ATAAGCTCTG ATAATGTCCC CCCTGAGTGA
  CTGGAGGGCA AAAAAATTAA AATATATGAA CTATCAAAAA TATTCAAGAT TCGCGTCACC
  TGGTCACATC TGGAAGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312033	CHEV_4_129011561	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240138616					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129228110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	289 bp proximal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	1042 bp upstream
Rr367702	regulatory region 367702	1490 bp upstream
Rr600200	regulatory region 600200	1004 bp proximal
Rr600201	regulatory region 600201	1043 bp proximal
Tssr39141	transcription start site region 39141	1276 bp upstream
Tssr39142	transcription start site region 39142	1645 bp upstream
Tssr39143	transcription start site region 39143	1699 bp upstream
Tssr43492	transcription start site region 43492	926 bp downstream
Tssr43493	transcription start site region 43493	980 bp downstream
Tssr43494	transcription start site region 43494	1007 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	1215 bp upstream