rs240143457 SNP Detail

Summary

• ID
  rs240143457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCATGGG ACGGAAGCAG
  GAACCTGTCA AAGGGGCGAG ACTGGGGTCC AGCACCCACA GACCCGCGAC TCCCAGGAAG
  GGAGGGCGAT AGCTGACCTC GGCGGAGCCA GCGTGTTCGC CACAGAACCT TTTCCCCGCG
  GCCGCCACCA TCCTGCAGAA GCGCTTCTTC TTTTCTACGA AGTAGTTGCA TCTGCCGTCG
  R
  TGGGAAATCC GATCGAGGGC GAAGTCGCCG CCGGAGCCTC CATAACGCTG GGTCCTTTTG
  AAAGCCTGGC TCAGCCCAAA GTTGTCAGTC CCCTTTGGTC CCACTTCCCT TAACAAACGT
  GGCCGCCTGA GGGGGGTGGG TCCACGGAAA TGACGCATCA GCCCGGCTCG GTCGGTGCCC
  GAACCGGAAA AAGGTGACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895812	CHEV_3_116297660	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240143457					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	within coordinates
Rr397965	regulatory region 397965	21 bp upstream
Rr583746	regulatory region 583746	271 bp distal
Rr583747	regulatory region 583747	5 bp proximal
Rr583748	regulatory region 583748	86 bp proximal
Rr583749	regulatory region 583749	279 bp proximal
Rr583750	regulatory region 583750	447 bp proximal
Sass6	SAS-6 centriolar assembly protein	240 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	217 bp upstream
Tssr35316	transcription start site region 35316	74 bp downstream
Tssr35317	transcription start site region 35317	106 bp downstream