rs240143648 SNP Detail

Summary

• ID
  rs240143648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64086708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACGAGAA AGTAAGCCCT
  CAGCCCGGCG CTGGTCTCCG CAGTCGGCGG TGACGTCATC ACCGCGCGCC TAGTAGAAGG
  CAGCGCCCTA AGGAAGTGGA AGGGGATGTT GAGTCGACTG CAGGAGCTCC GCAAGGAGGA
  GGAAACCCTG CTGCGTCTAA AGGCGGCTCT ACACGACCAA CTGAACCGCC TCAAGGTGAG
  M
  GTACAGCTTT CCAGCTCTAG CCCCTCGGGA CGTCGACGGA GCGCGGCGGT ACAGCTCCAG
  GCCGCTAGGT GTTGAGCAGG TTTAGCTCCT GAGCCCGCAT CTACCCCGAC CCAGCACGCC
  GGCTCACGGG TTACTGCTGT TTATATGCAC TAGAGGGGGC TTTAGTGTTG TCATGCTAGT
  ACTGAATCTC AGACCCGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838412	MGP_WTSI_9_64027233	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240143648					SNP	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838412	MGP_WTSI_9_64027233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64086708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	within coordinates
Rpl4	ribosomal protein L4	760 bp downstream
Rr368801	regulatory region 368801	64 bp downstream
Snapc5	small nuclear RNA activating complex, polypeptide 5	within coordinates
Tssr85602	transcription start site region 85602	1974 bp downstream
Tssr85603	transcription start site region 85603	1688 bp downstream
Tssr85604	transcription start site region 85604	1646 bp downstream
Tssr85605	transcription start site region 85605	1070 bp downstream
Tssr85606	transcription start site region 85606	1010 bp downstream
Tssr85607	transcription start site region 85607	144 bp downstream
Tssr85608	transcription start site region 85608	77 bp downstream
Tssr90132	transcription start site region 90132	1615 bp upstream
Tssr90133	transcription start site region 90133	1047 bp upstream
Tssr90134	transcription start site region 90134	977 bp upstream