rs240157719 SNP Detail

Summary

• ID
  rs240157719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAGGCT CCTTCTCACC
  TTCTCTCTCC CCCCCAGACT CCCCCCACCT CCCGCCCATT CTGAGCATCA TCCTTATCTT
  GAGGCTCTAC CACCAGTCCT CGACCCTCTG TGTGCACAGC CTGGCCACCT TTGAAGCACC
  TTTATCTCTT GCTCTTTTAG GCTCTGGCTC TTAGGTTCCC TGGACTTCTC CACACATCTC
  Y
  TTCATCCAGT GTGATCCTCC CTACGGGTCT CTTCGCTGCA GCTCAGGTCT GATCTAGGAA
  GAAGAGTGGG CTTAATTGGA AGACGGGATG AGGGTATAAA GAGGAGACTT GGGGGACCTG
  GGCTCTTCTT TCTTTGGCCT CCTTATGCCC AGAATCTCTC CCTTTTCTGT TTCCTCTGCT
  CAAGCTGTGT GTTGGTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147622	MGP_WTSI_14_55588178	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240157719					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147622	MGP_WTSI_14_55588178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206798 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1343 bp downstream
Rr407057	regulatory region 407057	1558 bp distal
Rr492380	regulatory region 492380	536 bp distal
Rr492381	regulatory region 492381	320 bp proximal
Tssr125718	transcription start site region 125718	658 bp downstream
Tssr125719	transcription start site region 125719	566 bp downstream
Tssr125720	transcription start site region 125720	541 bp downstream
Tssr125721	transcription start site region 125721	529 bp downstream
Tssr125722	transcription start site region 125722	81 bp downstream
Tssr125723	transcription start site region 125723	39 bp downstream
Tssr125724	transcription start site region 125724	within coordinates
Tssr125725	transcription start site region 125725	826 bp upstream
Tssr125726	transcription start site region 125726	851 bp upstream
Tssr125727	transcription start site region 125727	884 bp upstream
Tssr125728	transcription start site region 125728	1692 bp upstream
Tssr128746	transcription start site region 128746	1366 bp upstream
Tssr128747	transcription start site region 128747	1342 bp upstream
Tssr128748	transcription start site region 128748	1298 bp upstream
Tssr128749	transcription start site region 128749	1267 bp upstream
Tssr128750	transcription start site region 128750	1245 bp upstream
Tssr128751	transcription start site region 128751	1239 bp upstream
Tssr128752	transcription start site region 128752	1180 bp upstream
Tssr128753	transcription start site region 128753	981 bp upstream
Tssr128754	transcription start site region 128754	911 bp upstream
Tssr128755	transcription start site region 128755	1374 bp downstream
Tssr128756	transcription start site region 128756	1391 bp downstream