rs240180153 SNP Detail

Summary

• ID
  rs240180153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126814772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATCCGC CTCAGGTTCA
  GGAAATCGCA GTGATGTGGG TTCTCCACTA GAGGGCGGAC CAGATAGCTT TGCGTTCAAC
  GCCACCCTTA GGCTCTGCTC TCTGGGAGTA CTTCACTAGT CTAGAGAAGA ACCCAGGATT
  TGCAGCCCAA GGACCCCTCT TGTGGCCTCT AGGAACTCCC AAGACTAGAG CCCACCTCCA
  R
  CTTCACGTAT GAATTCAGAC CGAACTCCCT ACTGCTCTCA AAGCATGCCT GGCCTTACCC
  TCCACGGTAC CCCAGGAGTA GCGTCTTCCC CTCACTGGTC GGGTTCCATC CCTCACCACT
  TCACAAGACC CAACGACTGC GAAAGGGATG TTTTCCTATA GAACGGGAGT CAGGAGTCAC
  GTTGGCTCAT CCTGGGCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083315	MGP_WTSI_7_134359114	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240180153					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083315	MGP_WTSI_7_134359114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126814772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	693 bp distal
Cpgi19732	CpG island 19732	116 bp distal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1313 bp downstream
Rr655746	regulatory region 655746	1886 bp distal
Rr655747	regulatory region 655747	139 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1356 bp downstream
Tssr69179	transcription start site region 69179	1339 bp downstream
Tssr69180	transcription start site region 69180	1033 bp downstream
Tssr74960	transcription start site region 74960	1383 bp upstream
Tssr74961	transcription start site region 74961	837 bp upstream
Tssr74962	transcription start site region 74962	567 bp upstream
Tssr74963	transcription start site region 74963	530 bp upstream
Tssr74964	transcription start site region 74964	497 bp upstream
Tssr74965	transcription start site region 74965	251 bp upstream
Tssr74966	transcription start site region 74966	157 bp upstream
Tssr74967	transcription start site region 74967	83 bp downstream