rs240181842 SNP Detail

Summary

• ID
  rs240181842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57956510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTCTTT ATAGAAATAG
  GGCGGAGCGC AGCAGGGCGG GGCGGACGGG CACGCGCGGC GGGGACGCGC TTCCCGCCTC
  CCGCGTCCGC CAAGGCGCCT GGGCAGGCCG CGCCTAGACC ACGCCCCCAA GAGGTGGGGC
  GGTTTTCCAG GGGGCGGAGC CAGAGTCGGC TACTAGTGCA GCCTGGGGAC TGTCCTAGCG
  Y
  TGGCCTCACT CCTGGCTTCC CCGCCCCACT CTAAGCTGCC GAACAAGAAC CTTAGTTTAT
  AAGGGGCGGA GCTAGCACAG GCTCCTGGAG CAGCTTCGGG TTTTTCCAGG CTCCAGACGC
  CGCGCGGCAG CTACCCCTAA GAGCCAACTT CCAGCTGCCT CAAGGGCACT TTAACAGCGA
  ACAGCGCCGG GGTAGATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361657854	MGP_WTSI_4_57969382	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240181842					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361657854	MGP_WTSI_4_57969382	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57956510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	242 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	within coordinates
Rr592848	regulatory region 592848	110 bp distal
Rr592849	regulatory region 592849	724 bp distal
Rr592850	regulatory region 592850	within coordinates
Rr592851	regulatory region 592851	62 bp distal
Rr592852	regulatory region 592852	224 bp proximal
Rr592853	regulatory region 592853	725 bp proximal
Tssr1183	transcription start site region 1183	152 bp upstream
Tssr1184	transcription start site region 1184	86 bp upstream
Tssr37396	transcription start site region 37396	112 bp upstream
Tssr37397	transcription start site region 37397	414 bp upstream
Tssr41866	transcription start site region 41866	212 bp upstream
Txn1	thioredoxin 1	99 bp upstream