rs240190538 SNP Detail

Summary

• ID
  rs240190538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142621376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATATAA TATTTCTGTA
  TCACTCTGCT ACACTTAGTC TTTTTACTTT TGAGTTTTTT GTTTTGTTTT GTTTTGTTTT
  TGTTTTAGTT TTTTTTTTTG TCCTGAACTT TTCCTGTTAC CTTTTGGGAG CTGACATCAC
  ACATGGGTGG CATATGTGGG ATGTAGGGGT GGAGCTGGCC CTGGCTTGCA GGGCCCTGTA
  Y
  GTCTGGGACC CCTGGAGAGT TCTGCCTGCT GAGCCAAACC TCCTCTACAG CTACTTGCCC
  AGAGGCTTTG TAGCCTAGCT AGAGGGCCAT GCCCACCCAC TCAACCCACT GTGGGTCACA
  TTGCTCACAT CTTTTTAATC TTTGTTCCTT TCCTGCCTCC ATTTCAAGAG CTGGGTTTGT
  AAGCCCTCTT ATGCCTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373462659	MGP_WTSI_7_150253544	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240190538					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373462659	MGP_WTSI_7_150253544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142621376 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Cpgi19972	CpG island 19972	1248 bp proximal
Tssc4	tumor-suppressing subchromosomal transferable fragment 4	1610 bp upstream
Tssr2467	transcription start site region 2467	1308 bp downstream
Tssr2468	transcription start site region 2468	1865 bp upstream
Tssr70275	transcription start site region 70275	1876 bp downstream
Tssr70276	transcription start site region 70276	1845 bp downstream
Tssr70277	transcription start site region 70277	1690 bp downstream
Tssr70278	transcription start site region 70278	900 bp downstream
Tssr70279	transcription start site region 70279	251 bp downstream
Tssr70280	transcription start site region 70280	163 bp downstream
Tssr70281	transcription start site region 70281	98 bp downstream
Tssr70282	transcription start site region 70282	1758 bp upstream