rs240192959 SNP Detail

Summary

• ID
  rs240192959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103286568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCTCAGT AATCTGAACG
  CACTTCCCGT CCAGATGTCC TCACTTCATG GACAGTTGTC CTATCTTCCC CTCTGTCTGT
  GTTCCCATCA CGCTTTGTTG ACATCATCTG CCAAGCAGCC TGCATTATCA GTGTGACTGG
  GCAAAGAACT TCATTATTGT GTATTTCCAA CTCCTCATGC CTAACGAGGT ATGTACCTAG
  Y
  GTGCATTGCT TTGTAGAAAG GAAACTTAAT TACATCAAGC AGGTTTCTTC TCATGGAGGA
  AAAGTCTTTA CCAGAAGGTC TCAAAAGAAG CGAGTGCATA CAAAGGGGGT GCGAGGAGGT
  TCTAACCTTC TTCTCTTTGA AGTCTGTCAC AGAGAGCTTT GCTGGTATGA TTCACGGCTT
  GAAAGTGAAC CACCTGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295940	MGP_WTSI_14_103448349	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240192959					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295940	MGP_WTSI_14_103448349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103286568 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	392 bp upstream
Rr496962	regulatory region 496962	within coordinates
Tssr4512	transcription start site region 4512	37 bp downstream
Tssr126972	transcription start site region 126972	227 bp downstream
Tssr126973	transcription start site region 126973	100 bp downstream
Tssr126974	transcription start site region 126974	123 bp upstream
Tssr126975	transcription start site region 126975	133 bp upstream
Tssr126976	transcription start site region 126976	150 bp upstream
Tssr126977	transcription start site region 126977	172 bp upstream
Tssr126978	transcription start site region 126978	213 bp upstream
Tssr126979	transcription start site region 126979	239 bp upstream
Tssr126980	transcription start site region 126980	259 bp upstream
Tssr126981	transcription start site region 126981	470 bp upstream
Tssr126982	transcription start site region 126982	505 bp upstream
Tssr126983	transcription start site region 126983	565 bp upstream
Tssr126984	transcription start site region 126984	733 bp upstream
Tssr126985	transcription start site region 126985	1169 bp upstream
Tssr126986	transcription start site region 126986	1902 bp upstream
Tssr126987	transcription start site region 126987	1941 bp upstream
Tssr130074	transcription start site region 130074	750 bp upstream
Tssr130075	transcription start site region 130075	711 bp upstream
Tssr130076	transcription start site region 130076	696 bp upstream
Tssr130077	transcription start site region 130077	425 bp upstream
Tssr130078	transcription start site region 130078	398 bp upstream
Tssr130079	transcription start site region 130079	377 bp upstream