rs240193493 SNP Detail

Summary

• ID
  rs240193493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCAAGG GGCGATAAAC
  CCAAATATGT AACGGGAAAC CTTCCCTAAT TGATGCTGCA CTGCTGTTAA ATAACTGTAA
  AGGACAGATT CATCACCAAG TGCGCATATG TCTCTAGTGG GTAGCTGAAA ACATATTTAT
  CAGCTAAGAT ATATAAGATA AGCTCTCTCT CTATACCAAT ATAAAAAGAT GGGTCCGCAA
  Y
  AGTAATGGTC TGAAACTTTT CCAGGAACCC CCTCGGGACT AAAACATGAC TCAGCACACC
  CAACGGATGC TTGCTATGTA AATCTCCCCA AATCCTGACA AGTGTATTAT CTGGCATTCA
  ACAAGTAAGT TATCTGTGAT TCTGTAGGCA GTCTACTTCC TTTGATTGCT TAAAGCGAAA
  GTTACCGAGG ATAAAACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513548	CHEV_10_121023010	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240193493					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	293 bp proximal
Rr402304	regulatory region 402304	within coordinates
Rr402305	regulatory region 402305	772 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	823 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	263 bp upstream
Tssr96044	transcription start site region 96044	299 bp upstream
Tssr99623	transcription start site region 99623	71 bp upstream
Tssr99624	transcription start site region 99624	44 bp upstream
Tssr99625	transcription start site region 99625	within coordinates
Tssr99626	transcription start site region 99626	756 bp downstream
Tssr99627	transcription start site region 99627	776 bp downstream
Tssr99628	transcription start site region 99628	859 bp downstream
Tssr99629	transcription start site region 99629	887 bp downstream
Tssr99630	transcription start site region 99630	915 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1426 bp downstream