rs240194262 SNP Detail

Summary

• ID
  rs240194262
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5650598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTGGG AAAGCCCACT
  GGAACGTATG AGATGGCTTG ACAATGGGTG TAAGGAGGTA CAATATGTGC AGTGTGAGCT
  GGTGGGGCAT GTGCAGTGAG CTGGTGGGGC ATGTGCAATG AGCTGGTGGG GCATGTGCAG
  TGTGAGCTGG TGGGACATGT GCAGTGAGCT GGTGGGACAT GTGCAGCGTG AGCTGGTGGG
  G
  CATGTGCAGT GAGCTGGTGG GGCATATGCA GTGAGCTGGT AGGACATGTG CAGTGTGAGC
  TGGTAGGACA TGTGCAGTGA GCTGGTGGGG CATGTGCAGT GAGCTGGTGG GGCATGTGCA
  GTGAGCTGGT GGGGCATGTG CAGTGTGAGC TGGTGGGGCA TGTGCAGTGT GAGCTGGTGG
  GAAATACAGC GCAGCTGGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	SPRET/EiJ	WSB/EiJ
ss401658781	MGP_WTSI_19_5600570	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	SPRET/EiJ	WSB/EiJ
rs240194262					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401658781	MGP_WTSI_19_5600570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5650598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	1123 bp proximal
Rnaseh2c	ribonuclease H2, subunit C	1303 bp upstream
Rr363585	regulatory region 363585	1002 bp proximal
Rr370434	regulatory region 370434	1206 bp upstream
Tssr154457	transcription start site region 154457	1271 bp upstream
Tssr154458	transcription start site region 154458	1284 bp upstream