rs240200537 SNP Detail

Summary

• ID
  rs240200537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86287279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCGTCTGA GGCAAAAGAC
  TGAGCCTGCC CAGTAATCGC CTCTGGAAAG GCGACGAAGG GGGTCCTCGT GACTTCGGCT
  CCACCAACCA GAGCTCGCGT CCGTCCCCGG AGCCAACCGC GAGCCTTAAC GCGGGGCAGC
  GTGAGGCGGG CCTAAGGCTT GACGAGGGCG GGGCTCTTAG GGGCGGGGCC TGACGTCTGC
  Y
  CCTGAGGGCG GGACTCGTTT GGGCCCAGGC GGACGTTGAC TGGTCAGTGT GCGGGTCCTT
  TGAATGCTCC TGAGCGCCGG GCTCTCCCCA CGCCTGCGCA GTGGGACGGG CGAGTTTGGC
  GCGGCTTGTG TGTGAGGCGC GGGTAGGTGG CGGCGTGGCC CGGATTCCCT CAGGTGTTCC
  GAGGCAGCAT GGGCGGCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350367764	MGP_WTSI_1_88256132	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240200537					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367764	MGP_WTSI_1_88256132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86287279 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	27 bp upstream
Cpgi503	CpG island 503	within coordinates
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	1449 bp distal
Gm71192	predicted gene, 71192	95 bp downstream
Ncl	nucleolin	157 bp upstream
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	within coordinates
Tssr7749	transcription start site region 7749	within coordinates
Tssr7750	transcription start site region 7750	81 bp upstream
Tssr12786	transcription start site region 12786	1325 bp upstream
Tssr12787	transcription start site region 12787	1076 bp upstream
Tssr12788	transcription start site region 12788	560 bp upstream
Tssr12789	transcription start site region 12789	511 bp upstream
Tssr12790	transcription start site region 12790	176 bp upstream
Tssr12791	transcription start site region 12791	71 bp upstream
Tssr12792	transcription start site region 12792	394 bp downstream