rs240203665 SNP Detail

Summary

• ID
  rs240203665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46992679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGAAC GTGAAAGGAG
  ACCTGGTTTC ATCCCATCCC TATCCCGCCT TTCTGTCCCT GCAGCCCCTG CCCGGATGGC
  AGCAGTAGTT CTAGGGGGAG ACACCATGGG CCCTGAGCGT ATCTTCCCCA ATCAGACTGA
  GGACTTAGGG CCACATCAGG GTCCTACAGA AGGAACTGGG GATTGGAGCA GTGAAGAACC
  S
  GAGGAAGAGC AGGAGGAAAC AGGAGCAGGC CCAGCAGGCT ACTCGTACCA GCCCCTCAAT
  CAAGACCCTG AACAAGAAGA GGTGGAATTG GCACCAGTGG GTGAAGGAGA AGATGGAGCT
  GCTGACATCC AAGATCGGAT CCAGGTATGG TGGAGGATGC TGTTACTAAG CAGATGAGAT
  GGAATGTACC AACAGCTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398326263	MGP_WTSI_17_46818702	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240203665					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326263	MGP_WTSI_17_46818702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46992679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9239	CpG island 9239			177 bp distal
Klhdc3	kelch domain containing 3			839 bp upstream
Mea1	male enhanced antigen 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta			1238 bp downstream
Rr405317	regulatory region 405317			663 bp downstream
Rr527795	regulatory region 527795			563 bp distal
Rr527796	regulatory region 527796			1126 bp proximal
Tssr5136	transcription start site region 5136			972 bp upstream
Tssr5137	transcription start site region 5137			809 bp upstream
Tssr144872	transcription start site region 144872			1275 bp downstream
Tssr144873	transcription start site region 144873			742 bp downstream
Tssr144874	transcription start site region 144874			569 bp downstream
Tssr144875	transcription start site region 144875			223 bp upstream
Tssr144876	transcription start site region 144876			282 bp upstream
Tssr148367	transcription start site region 148367			1019 bp upstream
Tssr148368	transcription start site region 148368			997 bp upstream
Tssr148369	transcription start site region 148369			978 bp upstream
Tssr148370	transcription start site region 148370			919 bp upstream
Tssr148371	transcription start site region 148371			894 bp upstream
Tssr148372	transcription start site region 148372			820 bp upstream
Tssr148373	transcription start site region 148373			148 bp downstream
Tssr148374	transcription start site region 148374			160 bp downstream