rs240208109 SNP Detail

Summary

• ID
  rs240208109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45576651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAAATT ACAAAGAGAA
  GAAAGCCTAG CATCACCCCC GGAACACAAT AGTTCTTTAT AAACTGTAGT TATGCGCATA
  GTGAATGCTT ACACCCTTAA AATAGTTACC TTATTTCTAA TTATATGTCT ATCTGTGTGA
  TGGGGTGGAG GGTGATGACA TGAGTACAGG TGCTCAGAGG TCAGAGAGGT CAGAGATCTC
  Y
  CTGGAGCTGA GTTTTAGGCA GTTGTACAAT GCCCAACATG AGTGACGGGA ACCAAACTGT
  GGTCCTTTGA AAGAGCATGT GACTTCTTAA TTGCTGAGCC ATCTCTCTAG CCCCAAATGT
  TATAGATTTT TTTTTTTACT TTTTATTGAT TTTCTATGAG TTTCACATCA TGTACCCCAG
  TCTCACTCAT CTCCCCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	I/LnJ	LP/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss364761488	MGP_WTSI_5_45810548	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	I/LnJ	LP/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs240208109					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364761488	MGP_WTSI_5_45810548	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45576651 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd615e	DNA segment, Chr 5, ERATO Doi 615, expressed	within coordinates
Gm71490	predicted gene, 71490	775 bp upstream
Rr611049	regulatory region 611049	430 bp proximal
Rr611050	regulatory region 611050	654 bp proximal
Rr611051	regulatory region 611051	930 bp proximal
Rr611052	regulatory region 611052	1019 bp proximal