rs240216715 SNP Detail

Summary

• ID
  rs240216715
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52205094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAATATT AGGCTCTCCA
  CCAGAGAGGG GCTGGGAAGC TCCCGGGATC CACACCCCCT CGCTTGTCGG CAGGAAGAAG
  AAAGTGGTCA GCGCCAGGAA CTGGATGTGG CCTGTCCTGA CTGCCTCAGT CCCCTCCCCC
  TAATATTTTT CCTTTCCCTG CAAATTCCTC CAAGACACAC ACACCCCCAA CACAACCCAA
  S
  GTGTTCTAAA TATCCGGTAG TCCTCTGAGG TTCAGGTTTT CATTAAAGCA ATAACCCAGG
  AGTATAACTC TGCTCTTAAT TGTAATAGTA AATGGTAGAG TATTCCTGGC TGACTTTTTC
  ATTTTTTGTA TTCAGAGAAG ATATGTATCA TCACCATCAT CATTAATATC ATTAATATTT
  ATTAATTTAA AATACTTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308962	MGP_WTSI_6_52178113	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240216715					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308962	MGP_WTSI_6_52178113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52205094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17431	CpG island 17431	1735 bp distal
Cpgi17432	CpG island 17432	870 bp proximal
Gm52902	predicted gene, 52902	1795 bp upstream
Gm57855	predicted gene, 57855	within coordinates
Gm68361	predicted gene, 68361	within coordinates
Hoxa9	homeobox A9	1925 bp upstream
Mir196b	microRNA 196b	1967 bp downstream
Rr135831	regulatory region 135831	1107 bp proximal
Rr146300	regulatory region 146300	within coordinates
Rr146301	regulatory region 146301	306 bp proximal
Tssr56513	transcription start site region 56513	1781 bp upstream
Tssr56514	transcription start site region 56514	1857 bp upstream
Tssr56515	transcription start site region 56515	1895 bp upstream
Tssr61011	transcription start site region 61011	1952 bp upstream
Tssr61012	transcription start site region 61012	1918 bp upstream
Tssr61013	transcription start site region 61013	1966 bp downstream