rs240228958 SNP Detail

Summary

• ID
  rs240228958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156975891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAAGCTT TCTTTCTTTT TTTTTTTTCC CCCAGAGCTG
  AGGACCGCAC CCAGGGCCTT GCGCTTGCTA AGCACTCTAC CACTGAGCTA AATCCGCAAC
  Y
  CCTTTTAAAG CTTTCTTAAA GTCAGTCCTT CAGTTAGGCA CAAGGGGCTC CACCCCACAA
  GAAGTAAAGT TCACTGAATT TGAAAATCAT AACCACGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584426	CHEV_2_156959707	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240228958					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156975891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	580 bp proximal
Rr397438	regulatory region 397438	1075 bp upstream
Rr568443	regulatory region 568443	1225 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tssr21224	transcription start site region 21224	513 bp upstream
Tssr21225	transcription start site region 21225	1830 bp upstream
Tssr27158	transcription start site region 27158	within coordinates
Tssr27159	transcription start site region 27159	167 bp downstream
Tssr27160	transcription start site region 27160	1114 bp downstream
Tssr27161	transcription start site region 27161	1141 bp downstream
Tssr27162	transcription start site region 27162	1229 bp downstream