rs240234202 SNP Detail

Summary

• ID
  rs240234202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93021484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC CTAAGCTCTG AAGATATATG
  Y
  GATGAGAGTC AGGGCTTTCC CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395101	CHEV_2_93031296	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240234202					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93021484 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230071H18Rik	RIKEN cDNA C230071H18 gene			within coordinates
Rr367237	regulatory region 367237			1535 bp upstream
Rr561111	regulatory region 561111			1294 bp distal
Rr561113	regulatory region 561113			1936 bp distal
Rr561114	regulatory region 561114			1085 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
Tssr18983	transcription start site region 18983			22 bp downstream
Tssr18984	transcription start site region 18984			1267 bp upstream