rs240247254 SNP Detail

Summary

• ID
  rs240247254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:65133810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTGtctt tctttctttc tttctttctt
  tctttctttc tttctttctt tctttctttc tttctttctt tctttctttc tttctttctt
  ccttccttcc ttccttcctt ctttccttcc ttccttcctt cttttcttcc ctccttcctt
  Y
  tttctcttcc ttccttcctt ctttccttcc tctttctttc tttctttctt tctttctttc
  tttctttctt tctttctctc tctctctctc tctctctctc tttctttctt tctttctttc
  tttctctttc tttctttctt ttgtccttcc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323712866	CHEV_11_65056486	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240247254					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:65133810 () rs orientation: forward

Symbol	Name	Function Class
Myocd	myocardin	within coordinates
Rr251029	regulatory region 251029	445 bp proximal
Tssr108467	transcription start site region 108467	565 bp downstream
Tssr108468	transcription start site region 108468	586 bp downstream
Tssr108469	transcription start site region 108469	652 bp downstream
Tssr108470	transcription start site region 108470	672 bp downstream